[TIP] Simplify Stored Pubmed URLs
Posted: Sat Aug 05, 2017 11:34 pm
All of my URLs back to Pubmed looked like this in my Bookends database:
If you follow this link it actually resolves to the much cleaner:
For some of my formats I do print the URL in the bibliography and so this simplified format makes much nicer final bibliographies. In Bookends it is easy to find and replace.
First, for safety I add only those refs with a PMID to the Hits list: Then you can Find and Replace only URL field only in the hits list: You have to do this Find and Replace twice, because older URLs use http:// and newer ones use https://. So here is the find text:
The replace text is the same:
This updates all the Pubmed URLs stored in Bookends to the simpler format. 
Code: Select all
https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=3385477
Code: Select all
https://www.ncbi.nlm.nih.gov/pubmed/3385477
First, for safety I add only those refs with a PMID to the Hits list: Then you can Find and Replace only URL field only in the hits list: You have to do this Find and Replace twice, because older URLs use http:// and newer ones use https://. So here is the find text:
Code: Select all
https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=
Code: Select all
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=
Code: Select all
https://www.ncbi.nlm.nih.gov/pubmed/
