I'm trying to use Bookends with LaTeX (I'm using TeXShop, and all my files are encoded in utf-8, because i'm using XeLaTeX). I have two questions here, one in usage theory, and one to solve a practical problem I'm having:
1. usage theory: when should one just export the bookends file as .bib, place it in the .tex file's folder, and just do the bibliography from within latex; and when should one use the Bookends "Scan Document" feature? What is the difference between the two as far as real output, or process? (What crossed my mind was that I would be able to use Bookends built in file formats, ex. Chicago, while if I ran it off as a .bib file inside the LaTeX program, I'd have to define the citation format...correct?)
2. practical problem: I was experimenting with Scan Document (so that I could just answer #1 by myself

* Generate a bibliography after scan [Scan Using ... APA/5th Edition]
* Send bibliography to (Bibliography window)
* Generate bibliography as (BibTex)
etc....
Now, the problem is: no matter what settings I choose in that pane above, when it comes to run the scan, it finds my four citations from the LaTeX file just fine, BUT it refuses to read the unicode characters correctly: instead, it replaces them with other characters. So, instead of "Bājūrī", I get "BÆ’Ã…j≈´rƒ´"; instead of "Dhahabī", I get "Dhahabƒ´".
I even went to the preferences, and played with all the bibtex conversion settings, but I couldn't get it to work. I am sure that my .tex file is utf-8, and obviously my Bookends database is utf-8. Somewhere in the middle something is getting translated and lost.
Help?